Single3 scRNA-seq analysis 기존 bulk방식의 RNA-seq 데이터의 수집 및 분석 방식과 single cell RNA-seq 방식의 차이는 다음과 같다. Process for barcoding single-cell data 더보기 Remove Doublet 더보기 Gene cell-type annotation 더보기 DB - CellMarker : http://biocc.hrbmu.edu.cn/CellMarker/ - CanserSEA : http://biocc.hrbmu.edu.cn/CancerSEA/home.jsp Software - SCSA (python) : https://github.com/bioinfo-ibms-pumc/SCSA - scMatch (python) : https://github.com/asrhou/scM.. 2021. 8. 19. Single Cell analysis tools 1. Scanpy [ python ] - Github : https://github.com/theislab/scanpy - Paper : https://genomebiology.biomedcentral.com/articles/10.1186/s13059-017-1382-0 - Tutorial : https://scanpy.readthedocs.io/en/stable/tutorials.html : https://training.galaxyproject.org/training-material/topics/transcriptomics/tutorials/scrna-scanpy-pbmc3k/tutorial.html # https://docs.conda.io/en/latest/miniconda.html cd DOWN.. 2021. 8. 13. The art of using t-SNE for single-cell transcriptomics The art of using t-SNE for single-cell transcriptomics - Paper : https://www.nature.com/articles/s41467-019-13056-x - Github : https://github.com/berenslab/rna-seq-tsne - Demo : https://github.com/berenslab/rna-seq-tsne/blob/master/demo.ipynb Reference - scRNA-seq data analysis tools and papers, https://github.com/mdozmorov/scRNA-seq_notes - Analysis of single cell RNA-seq data, https://scrnaseq.. 2021. 4. 16. 이전 1 다음
